I haven't used again the AM5 yet but this is a part of the last PHD2 log from last night - you can see the West calibration ends at 1.298 distance from starting point and yet there are 4 Backlash steps for 11.392 before calibration starts on the next axis.
There are no missing steps (because I have not used the OAG this time) but the backlash problem is still the same.
Equipment Profile =
Camera = ZWO ASI120MM Mini
Exposure = 2000 ms
Pixel scale = 3.87 arc-sec/px, Binning = 1, Focal length = 200 mm
Mount = iOptron CEM40/GEM45 HC-FW 210101+, Calibration Step = 2000 ms, Assume orthogonal axes = no
Dec = -24.2 deg, Hour angle = 2.95 hr, Pier side = East, Rotator pos = N/A
Lock position = 1127.096, 392.295, Star position = 1126.959, 391.061, HFD = 4.49 px
Direction,Step,dx,dy,x,y,Dist
West,0,0.000,0.000,1126.888,391.437,0.000
West,1,0.697,3.354,1126.191,388.084,3.425
West,2,1.350,6.929,1125.538,384.508,7.060
West,3,2.113,10.578,1124.776,380.860,10.787
West,4,2.603,14.135,1124.285,377.303,14.372
West,5,3.235,17.652,1123.653,373.785,17.946
West,6,4.056,21.381,1122.832,370.057,21.762
West,7,4.695,25.125,1122.193,366.312,25.560
West calibration complete. Angle = 79.4 deg, Rate = 1.826 px/sec, Parity = Even
East,7,4.695,25.125,1122.193,366.312,25.560
East,6,4.145,21.551,1122.743,369.886,21.946
East,5,3.584,17.951,1123.304,373.487,18.305
East,4,2.734,14.107,1124.154,377.331,14.369
East,3,2.018,10.385,1124.870,381.052,10.579
East,2,1.486,6.713,1125.402,384.725,6.875
East,1,0.506,2.607,1126.382,388.831,2.655
East,0,-0.126,-1.292,1127.015,392.729,1.298
Backlash,0,0.000,0.000,1127.015,392.729,0.000
Backlash,1,-3.020,0.832,1130.035,391.897,3.133
Backlash,2,-6.890,0.945,1133.905,391.784,6.955
Backlash,3,-11.240,1.853,1138.255,390.876,11.392
North,0,0.000,0.000,1133.905,391.784,0.000
North,1,-4.350,0.909,1138.255,390.876,4.444
North,2,-8.120,1.391,1142.025,390.393,8.238
North,3,-11.913,2.107,1145.818,389.677,12.098
North,4,-15.782,2.866,1149.687,388.918,16.041
North,5,-19.424,3.494,1153.329,388.290,19.736
North,6,-23.496,4.335,1157.401,387.449,23.892
North,7,-27.166,5.066,1161.071,386.718,27.634
North calibration complete. Angle = -10.6 deg, Rate = 1.974 px/sec, Parity = Odd
South,7,-27.166,5.066,1161.071,386.718,27.634
South,6,-24.413,4.612,1158.318,387.172,24.845
South,5,-20.658,4.038,1154.563,387.747,21.049
South,4,-16.860,3.156,1150.765,388.629,17.153
South,3,-13.281,2.782,1147.186,389.002,13.570
South,2,-9.405,2.011,1143.310,389.773,9.618
South,1,-5.812,1.535,1139.717,390.249,6.011
South,0,-1.966,0.627,1135.871,391.158,2.063
Calibration complete, mount = iOptron CEM40/GEM45 HC-FW 210101+.