In either mode turn the mount on then hold the Cancel button on the remote and that will send it to home position. Align the mount and tripod so they are facing north. If EQ mode then of course you need to adjust the RA axis to the latitude for your location. Alt-az mode the RA axis needs to be set to 90 degrees (straight up). It will not matter as to the base of the mount since you are just pointing the whole thing north, I am assuming you are in the northern hemisphere.
ZWO will iron out the goto, probably just refining the code, finding errors. Tracking here in either mode is good. Ensure it is level, pointed north and if EQ mode ensure you use the correct latitude for your location. In EQ mode user your RACI to get to Polaris and then in the eyepiece. You have to adjust the setup manually here, moving the whole setup by hand. Turn the tripod and mount east / west and manually adjust the latitude (do your initial latitude adjustment in the house before you mount a scope on it). Use a eyepiece that gives you a 1 degree FOV and center Polaris in it. This will be fine for visual and tracking will be good. You will just have to slew to center your targets after every goto but it will track fine.
Edit:
Once you have Polaris close use the azimuth adjust on the mount to fine tune and center. Sorry, forgot to share up there.