park123 But I have no idea what is happening and ideas???????
If you are looking at the size of the FITS files, they could indeed be different, since the length of the FITS headers can vary (temperature changing from 0 to -20, for example, or exposure times that are different, or filter names with different string lengths, etc).
However, what is important is the image (sensor) size, not the file size. Use a FITS inspector to see if the image sizes are the same. The FITS inspector should also explain why the file sizes are different.
Chen