So for my set up, the process thus far looks like this:
1. Capture with latest FC software in separate LRGB sets in BPM or TIFF format.
2. Take Darks, Bias and Flats
3. PIPP pre-sorting best frames (say 3,000 per set)
4. Deep Sky Stacker staking per LRGB set
5. Combine and process in Photoshop
The only issue remaining is the vertical banding issue being reported in terms of gradients - so perhaps a Gradient Removal Plug In or Action for Photoshop??